Genomic Regression Analysis of Coordinated Expression
Analysis
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Enter a Gene Symbol
Choose an Analysis
Pick a TCGA Cohort
Select Samples and Method
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Step 1: Enter a Gene Symbol
Pick from KEGG Pathways
GLYCOLYSIS_GLUCONEOGENESIS
CITRATE_CYCLE_TCA_CYCLE
PENTOSE_PHOSPHATE_PATHWAY
PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS
FRUCTOSE_AND_MANNOSE_METABOLISM
GALACTOSE_METABOLISM
ASCORBATE_AND_ALDARATE_METABOLISM
FATTY_ACID_METABOLISM
STEROID_BIOSYNTHESIS
PRIMARY_BILE_ACID_BIOSYNTHESIS
STEROID_HORMONE_BIOSYNTHESIS
OXIDATIVE_PHOSPHORYLATION
PURINE_METABOLISM
PYRIMIDINE_METABOLISM
ALANINE_ASPARTATE_AND_GLUTAMATE_METABOLISM
GLYCINE_SERINE_AND_THREONINE_METABOLISM
CYSTEINE_AND_METHIONINE_METABOLISM
VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION
VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS
LYSINE_DEGRADATION
ARGININE_AND_PROLINE_METABOLISM
HISTIDINE_METABOLISM
TYROSINE_METABOLISM
PHENYLALANINE_METABOLISM
TRYPTOPHAN_METABOLISM
BETA_ALANINE_METABOLISM
TAURINE_AND_HYPOTAURINE_METABOLISM
SELENOAMINO_ACID_METABOLISM
GLUTATHIONE_METABOLISM
STARCH_AND_SUCROSE_METABOLISM
N_GLYCAN_BIOSYNTHESIS
OTHER_GLYCAN_DEGRADATION
O_GLYCAN_BIOSYNTHESIS
AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM
GLYCOSAMINOGLYCAN_DEGRADATION
GLYCOSAMINOGLYCAN_BIOSYNTHESIS_CHONDROITIN_SULFATE
GLYCOSAMINOGLYCAN_BIOSYNTHESIS_KERATAN_SULFATE
GLYCOSAMINOGLYCAN_BIOSYNTHESIS_HEPARAN_SULFATE
GLYCEROLIPID_METABOLISM
INOSITOL_PHOSPHATE_METABOLISM
GLYCOSYLPHOSPHATIDYLINOSITOL_GPI_ANCHOR_BIOSYNTHESIS
GLYCEROPHOSPHOLIPID_METABOLISM
ETHER_LIPID_METABOLISM
ARACHIDONIC_ACID_METABOLISM
LINOLEIC_ACID_METABOLISM
ALPHA_LINOLENIC_ACID_METABOLISM
SPHINGOLIPID_METABOLISM
GLYCOSPHINGOLIPID_BIOSYNTHESIS_LACTO_AND_NEOLACTO_SERIES
GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBO_SERIES
GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIO_SERIES
PYRUVATE_METABOLISM
GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM
PROPANOATE_METABOLISM
BUTANOATE_METABOLISM
ONE_CARBON_POOL_BY_FOLATE
RIBOFLAVIN_METABOLISM
NICOTINATE_AND_NICOTINAMIDE_METABOLISM
PANTOTHENATE_AND_COA_BIOSYNTHESIS
FOLATE_BIOSYNTHESIS
RETINOL_METABOLISM
PORPHYRIN_AND_CHLOROPHYLL_METABOLISM
TERPENOID_BACKBONE_BIOSYNTHESIS
LIMONENE_AND_PINENE_DEGRADATION
NITROGEN_METABOLISM
SULFUR_METABOLISM
AMINOACYL_TRNA_BIOSYNTHESIS
METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450
DRUG_METABOLISM_CYTOCHROME_P450
DRUG_METABOLISM_OTHER_ENZYMES
BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS
ABC_TRANSPORTERS
RIBOSOME
RNA_DEGRADATION
RNA_POLYMERASE
BASAL_TRANSCRIPTION_FACTORS
DNA_REPLICATION
SPLICEOSOME
PROTEASOME
PROTEIN_EXPORT
PPAR_SIGNALING_PATHWAY
BASE_EXCISION_REPAIR
NUCLEOTIDE_EXCISION_REPAIR
MISMATCH_REPAIR
HOMOLOGOUS_RECOMBINATION
NON_HOMOLOGOUS_END_JOINING
MAPK_SIGNALING_PATHWAY
ERBB_SIGNALING_PATHWAY
CALCIUM_SIGNALING_PATHWAY
CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION
CHEMOKINE_SIGNALING_PATHWAY
PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM
NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION
CELL_CYCLE
OOCYTE_MEIOSIS
P53_SIGNALING_PATHWAY
UBIQUITIN_MEDIATED_PROTEOLYSIS
SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT
REGULATION_OF_AUTOPHAGY
LYSOSOME
ENDOCYTOSIS
PEROXISOME
MTOR_SIGNALING_PATHWAY
APOPTOSIS
CARDIAC_MUSCLE_CONTRACTION
VASCULAR_SMOOTH_MUSCLE_CONTRACTION
WNT_SIGNALING_PATHWAY
DORSO_VENTRAL_AXIS_FORMATION
NOTCH_SIGNALING_PATHWAY
HEDGEHOG_SIGNALING_PATHWAY
TGF_BETA_SIGNALING_PATHWAY
AXON_GUIDANCE
VEGF_SIGNALING_PATHWAY
FOCAL_ADHESION
ECM_RECEPTOR_INTERACTION
CELL_ADHESION_MOLECULES_CAMS
ADHERENS_JUNCTION
TIGHT_JUNCTION
GAP_JUNCTION
COMPLEMENT_AND_COAGULATION_CASCADES
ANTIGEN_PROCESSING_AND_PRESENTATION
RENIN_ANGIOTENSIN_SYSTEM
TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY
NOD_LIKE_RECEPTOR_SIGNALING_PATHWAY
RIG_I_LIKE_RECEPTOR_SIGNALING_PATHWAY
CYTOSOLIC_DNA_SENSING_PATHWAY
JAK_STAT_SIGNALING_PATHWAY
HEMATOPOIETIC_CELL_LINEAGE
NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY
T_CELL_RECEPTOR_SIGNALING_PATHWAY
B_CELL_RECEPTOR_SIGNALING_PATHWAY
FC_EPSILON_RI_SIGNALING_PATHWAY
FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS
LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION
INTESTINAL_IMMUNE_NETWORK_FOR_IGA_PRODUCTION
CIRCADIAN_RHYTHM_MAMMAL
LONG_TERM_POTENTIATION
NEUROTROPHIN_SIGNALING_PATHWAY
LONG_TERM_DEPRESSION
OLFACTORY_TRANSDUCTION
TASTE_TRANSDUCTION
REGULATION_OF_ACTIN_CYTOSKELETON
INSULIN_SIGNALING_PATHWAY
GNRH_SIGNALING_PATHWAY
PROGESTERONE_MEDIATED_OOCYTE_MATURATION
MELANOGENESIS
ADIPOCYTOKINE_SIGNALING_PATHWAY
TYPE_II_DIABETES_MELLITUS
TYPE_I_DIABETES_MELLITUS
MATURITY_ONSET_DIABETES_OF_THE_YOUNG
ALDOSTERONE_REGULATED_SODIUM_REABSORPTION
VASOPRESSIN_REGULATED_WATER_REABSORPTION
PROXIMAL_TUBULE_BICARBONATE_RECLAMATION
ALZHEIMERS_DISEASE
PARKINSONS_DISEASE
AMYOTROPHIC_LATERAL_SCLEROSIS_ALS
HUNTINGTONS_DISEASE
PRION_DISEASES
VIBRIO_CHOLERAE_INFECTION
EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION
PATHOGENIC_ESCHERICHIA_COLI_INFECTION
LEISHMANIA_INFECTION
PATHWAYS_IN_CANCER
COLORECTAL_CANCER
RENAL_CELL_CARCINOMA
PANCREATIC_CANCER
ENDOMETRIAL_CANCER
GLIOMA
PROSTATE_CANCER
THYROID_CANCER
BASAL_CELL_CARCINOMA
MELANOMA
BLADDER_CANCER
CHRONIC_MYELOID_LEUKEMIA
ACUTE_MYELOID_LEUKEMIA
SMALL_CELL_LUNG_CANCER
NON_SMALL_CELL_LUNG_CANCER
ASTHMA
AUTOIMMUNE_THYROID_DISEASE
SYSTEMIC_LUPUS_ERYTHEMATOSUS
ALLOGRAFT_REJECTION
GRAFT_VERSUS_HOST_DISEASE
PRIMARY_IMMUNODEFICIENCY
HYPERTROPHIC_CARDIOMYOPATHY_HCM
ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC
DILATED_CARDIOMYOPATHY
VIRAL_MYOCARDITIS
Step 2: Choose an Analysis
RNA and DNA Copy Number Scatter Plot
Co-expression Analysis
Step 3: Pick a TCGA cohort
BLCA - Bladder Urothelial Carcinoma
BRCA - Breast invasive carcinoma
CESC - Cervical squamous cell carcinoma and endocervical adenocarcinoma
CHOL - Cholangiocarcinoma
COAD - Colon adenocarcinoma
GBM - Glioblastoma multiforme
HNSC - Head and Neck squamous cell carcinoma
KICH - Kidney Chromophobe
KIRC - Kidney renal clear cell carcinoma
KIRP - Kidney renal papillary cell carcinoma
LAML - Acute Myeloid Leukemia
LGG - Brain Lower Grade Glioma
LIHC - Liver hepatocellular carcinoma
LUAD - Lung adenocarcinoma
LUSC - Lung squamous cell carcinoma
MESO - Mesothelioma
OV - Ovarian serous cystadenocarcinoma
PAAD - Pancreatic adenocarcinoma
PCPG - Pheochromocytoma and Paraganglioma
PRAD - Prostate adenocarcinoma
READ - Rectum adenocarcinoma
Step 4: Select Samples and Method
Sort genes by
Positive
Negative Correlation
Choose top
genes
Choose gene sets from
KEGG Pathways
HGNC Gene Families
REACTOME Pathways
Pathway Interaction Database (PID)
GO Biological Process
GO Cellular Component
GO Molecular Function
Human Phenotype Ontology
MGI Mammalian Phenotype
OMIM Disease
OMIM Expanded
CHEA
HMDB Metabolites